Publications

2022

Predictable topological sensitivity of Turing patterns on graphs
Marc-Thorsten Hütt, Dieter Armbruster, Annick Lesne
Physical Review E, 2022.
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                    @article{hutt2022predictable,
 author = {Hütt, Marc-Thorsten and Armbruster, Dieter and Lesne, Annick},
 date-modified = {2022-02-19 07:45:12 +0100},
 journal = {Physical Review E},
 number = {1},
 pages = {014304},
 publisher = {American Physical Society},
 title = {Predictable topological sensitivity of Turing patterns on graphs},
 volume = {105},
 year = {2022}
}


                
Paleometagenomic network analysis of ancient DNA from Bering Sea sediments to examine past ecological communities
Viktor Dinkel, Stella Zora Buchwald, Kathleen Stoof-Leichsenring, Marc-Thorsten Hütt, Dirk Nürnberg, Ulrike Herzschuh
2022.
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                    @techreport{dinkel2022paleometagenomic,
 author = {Dinkel, Viktor and Buchwald, Stella Zora and Stoof-Leichsenring, Kathleen and Hütt, Marc-Thorsten and Nürnberg, Dirk and Herzschuh, Ulrike},
 institution = {Copernicus Meetings},
 title = {Paleometagenomic network analysis of ancient DNA from Bering Sea sediments to examine past ecological communities},
 year = {2022}
}


                
Exploring cocoa bean fermentation mechanisms by kinetic modelling
Mauricio Moreno-Zambrano, Matthias S Ullrich, Marc-Thorsten Hütt
Royal Society Open Science, 2022.
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                    @article{moreno2022exploring,
 author = {Moreno-Zambrano, Mauricio and Ullrich, Matthias S and Hütt, Marc-Thorsten},
 journal = {Royal Society Open Science},
 publisher = {The Royal Society},
 title = {Exploring cocoa bean fermentation mechanisms by kinetic modelling},
 year = {2022}
}


                
Effect of slab width on choice of appropriate casting speed in steel production
Daniel Christopher Merten, Marc-Thorsten Hütt, Yilmaz Uygun
Journal of Iron and Steel Research International, 2022.
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                    @article{merten2022effect,
 author = {Merten, Daniel Christopher and Hütt, Marc-Thorsten and Uygun, Yilmaz},
 journal = {Journal of Iron and Steel Research International},
 pages = {1--9},
 publisher = {Springer Singapore},
 title = {Effect of slab width on choice of appropriate casting speed in steel production},
 year = {2022}
}


                
Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study
Kim Philipp Jablonski, Leopold Carron, Julien Mozziconacci, Thierry Forné, Marc-Thorsten Hütt, Annick Lesne
Human genomics, 2022.
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                    @article{jablonski2022contribution,
 author = {Jablonski, Kim Philipp and Carron, Leopold and Mozziconacci, Julien and Forné, Thierry and Hütt, Marc-Thorsten and Lesne, Annick},
 date-modified = {2022-02-19 07:45:25 +0100},
 journal = {Human genomics},
 number = {1},
 pages = {1--15},
 publisher = {BioMed Central},
 title = {Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study},
 volume = {16},
 year = {2022}
}


                
Cocoa bean fingerprinting via correlation networks
Santhust Kumar, Roy N D'Souza, Marcello Corno, Matthias S Ullrich, Nikolai Kuhnert, Marc-Thorsten Hütt
npj Science of Food, 2022.
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                    @article{kumar2022cocoa,
 author = {Kumar, Santhust and D'Souza, Roy N and Corno, Marcello and Ullrich, Matthias S and Kuhnert, Nikolai and Hütt, Marc-Thorsten},
 journal = {npj Science of Food},
 number = {1},
 pages = {1--9},
 publisher = {Nature Publishing Group},
 title = {Cocoa bean fingerprinting via correlation networks},
 volume = {6},
 year = {2022}
}


                
Collective patterns and stable misunderstandings in networks striving for consensus without a common value system
Johannes Falk, Edwin Eichler, Katja Windt, Marc-Thorsten Hütt
Scientific Reports, 2022.
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@article{falkCollectivePatternsStable2022,
  title = {Collective Patterns and Stable Misunderstandings in Networks Striving for Consensus without a Common Value System},
  author = {Falk, Johannes and Eichler, Edwin and Windt, Katja and H{\"u}tt, Marc-Thorsten},
  year = {2022},
  month = feb,
  journal = {Scientific Reports},
  volume = {12},
  number = {1},
  pages = {3028},
  publisher = {{Nature Publishing Group}},
  issn = {2045-2322},
  doi = {10.1038/s41598-022-06880-7}
}




                
Local topological features of robust supply networks
Alexey Lyutov, Yilmaz Uygun, Marc-Thorsten Hütt
Applied Network Science, 2022.
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                    @article{lyutov2021local,
 author = {Lyutov, Alexey and Uygun, Yilmaz and Hütt, Marc-Thorsten},
 journal = {Applied Network Science},
 title = {Local topological features of robust supply networks},
 year = {2022}
}


                
Inferring missing edges in a graph from observed collective patterns
Selim Haj Ali, Marc-Thorsten Hütt
Physical Review E, 2022.
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                    @article{hajaliInferringMissingEdges2022,
 abstract = {Many real-life networks are incomplete. Dynamical observations can allow estimating missing edges. Such procedures, often summarized under the term ‘network inference’, typically evaluate the statistical correlations among pairs of nodes to determine connectivity. Here, we offer an alternative approach: completing an incomplete network by observing its collective behavior. We illustrate this approach for the case of patterns emerging in reaction-diffusion systems on graphs, where collective behaviors can be associated with eigenvectors of the network's Laplacian matrix. Our method combines a partial spectral decomposition of the network's Laplacian matrix with eigenvalue assignment by matching the patterns to the eigenvectors of the incomplete graph. We show that knowledge of a few collective patterns can allow the prediction of missing edges and that this result holds across a range of network architectures. We present a numerical case study using activator-inhibitor dynamics and we illustrate that the main requirement for the observed patterns is that they are not confined to subsets of nodes, but involve the whole network.},
 author = {Haj Ali, Selim and Hütt, Marc-Thorsten},
 doi = {10.1103/PhysRevE.105.064610},
 file = {APS Snapshot:/home/johannes/.mozilla/firefox/5ah0aj87.default/zotero/storage/HS5VIBKF/PhysRevE.105.html:text/html;Full Text PDF:/home/johannes/.mozilla/firefox/5ah0aj87.default/zotero/storage/I3PDVLD8/Haj Ali und Hütt - 2022 - Inferring missing edges in a graph from observed c.pdf:application/pdf},
 journal = {Physical Review E},
 month = {June},
 note = {Publisher: American Physical Society},
 number = {6},
 pages = {064610},
 title = {Inferring missing edges in a graph from observed collective patterns},
 url = {https://link.aps.org/doi/10.1103/PhysRevE.105.064610},
 urldate = {2022-09-09},
 volume = {105},
 year = {2022}
}


                
A network analysis of decision strategies of human experts in steel manufacturing
Daniel Christopher Merten, Marc-Thorsten Hütt, Yilmaz Uygun
Computers & Industrial Engineering, 2022.
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                    @article{merten2022effect,
 author = {Merten, Daniel Christopher and Hütt, Marc-Thorsten and Uygun, Yilmaz},
 journal = {Computers & Industrial Engineering},
 pages = {108--120},
 title = {A network analysis of decision strategies of human experts in steel manufacturing},
 year = {2022}
}


                

2021

Two classes of functional connectivity in dynamical processes in networks
Venetia Voutsa, Demian Battaglia, Louise J Bracken, Andrea Brovelli, Julia Costescu, Mario Diaz Munoz, Brian D Fath, Andrea Funk, Mel Guirro, Thomas Hein, et al.
Journal of the Royal Society Interface, 2021.
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                    @article{voutsa2021two,
 author = {Voutsa, Venetia and Battaglia, Demian and Bracken, Louise J and Brovelli, Andrea and Costescu, Julia and Diaz Munoz, Mario and Fath, Brian D and Funk, Andrea and Guirro, Mel and Hein, Thomas and others},
 journal = {Journal of the Royal Society Interface},
 number = {183},
 pages = {20210486},
 publisher = {The Royal Society},
 title = {Two classes of functional connectivity in dynamical processes in networks},
 volume = {18},
 year = {2021}
}


                
The economy of chromosomal distances in bacterial gene regulation
Eda Cakir, Annick Lesne, Marc-Thorsten Hütt
NPJ systems biology and applications, 2021.
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                    @article{cakir2021economy,
 author = {Cakir, Eda and Lesne, Annick and Hütt, Marc-Thorsten},
 journal = {NPJ systems biology and applications},
 number = {1},
 pages = {1--9},
 publisher = {Nature Publishing Group},
 title = {The economy of chromosomal distances in bacterial gene regulation},
 volume = {7},
 year = {2021}
}


                
Physics is Organized Around Transformations Connecting Contextures in a Polycontextural World
Johannes Falk, Edwin Eichler, Katja Windt, Marc-Thorsten Hütt
Foundations of Science, 2021.
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                    @article{falk2021physics,
 author = {Falk, Johannes and Eichler, Edwin and Windt, Katja and Hütt, Marc-Thorsten},
 journal = {Foundations of Science},
 pages = {1--23},
 publisher = {Springer Netherlands},
 title = {Physics is Organized Around Transformations Connecting Contextures in a Polycontextural World},
 year = {2021}
}


                
Machine learning misclassification of academic publications reveals non-trivial interdependencies of scientific disciplines
Alexey Lyutov, Yilmaz Uygun, Marc-Thorsten Hütt
Scientometrics, 2021.
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                    @article{lyutov2021machine,
 author = {Lyutov, Alexey and Uygun, Yilmaz and Hütt, Marc-Thorsten},
 journal = {Scientometrics},
 number = {2},
 pages = {1173--1186},
 publisher = {Springer International Publishing},
 title = {Machine learning misclassification of academic publications reveals non-trivial interdependencies of scientific disciplines},
 volume = {126},
 year = {2021}
}


                
Inferring pattern generators on networks
Piotr Nyczka, Marc-Thorsten Hütt, Annick Lesne
Physica A: Statistical Mechanics and its Applications, 2021.
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                    @article{nyczka2021inferring,
 author = {Nyczka, Piotr and Hütt, Marc-Thorsten and Lesne, Annick},
 journal = {Physica A: Statistical Mechanics and its Applications},
 pages = {125631},
 publisher = {North-Holland},
 title = {Inferring pattern generators on networks},
 volume = {566},
 year = {2021}
}


                
Cocoa origin classifiability through LC-MS data: A statistical approach for large and long-term datasets
Santhust Kumar, Roy N D'Souza, Britta Behrends, Marcello Corno, Matthias S Ullrich, Nikolai Kuhnert, Marc-Thorsten Hütt
Food Research International, 2021.
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                    @article{kumar2021cocoa,
 author = {Kumar, Santhust and D'Souza, Roy N and Behrends, Britta and Corno, Marcello and Ullrich, Matthias S and Kuhnert, Nikolai and Hütt, Marc-Thorsten},
 date-modified = {2022-02-19 07:46:02 +0100},
 journal = {Food Research International},
 pages = {109983},
 publisher = {Elsevier},
 title = {Cocoa origin classifiability through LC-MS data: A statistical approach for large and long-term datasets},
 volume = {140},
 year = {2021}
}


                
A review of planning and scheduling methods for hot rolling mills in steel production
Atilla Özgür, Yilmaz Uygun, Marc-Thorsten Hütt
Computers & Industrial Engineering, 2021.
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                    @article{ozgur2021review,
 author = {Özgür, Atilla and Uygun, Yilmaz and Hütt, Marc-Thorsten},
 journal = {Computers & Industrial Engineering},
 pages = {106606},
 publisher = {Pergamon},
 title = {A review of planning and scheduling methods for hot rolling mills in steel production},
 volume = {151},
 year = {2021}
}


                
A minimal model for gene expression dynamics of bacterial type II toxin--antitoxin systems
Kosmas Kosmidis, Marc-Thorsten Hütt
Scientific reports, 2021.
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                    @article{kosmidis2021minimal,
 author = {Kosmidis, Kosmas and Hütt, Marc-Thorsten},
 journal = {Scientific reports},
 number = {1},
 pages = {1--12},
 publisher = {Nature Publishing Group},
 title = {A minimal model for gene expression dynamics of bacterial type II toxin--antitoxin systems},
 volume = {11},
 year = {2021}
}


                
A hexokinase isoenzyme switch in human liver cancer cells promotes lipogenesis and enhances innate immunity
Laure Perrin-Cocon, Pierre-Olivier Vidalain, Clémence Jacquemin, Anne Aublin-Gex, Keedrian Olmstead, Baptiste Panthu, Gilles Jeans Philippe Rautureau, Patrice André, Piotr Nyczka, Marc-Thorsten Hütt, et al.
Communications biology, 2021.
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                    @article{perrin2021hexokinase,
 author = {Perrin-Cocon, Laure and Vidalain, Pierre-Olivier and Jacquemin, Clémence and Aublin-Gex, Anne and Olmstead, Keedrian and Panthu, Baptiste and Rautureau, Gilles Jeans Philippe and André, Patrice and Nyczka, Piotr and Hütt, Marc-Thorsten and others},
 journal = {Communications biology},
 number = {1},
 pages = {1--15},
 publisher = {Nature Publishing Group},
 title = {A hexokinase isoenzyme switch in human liver cancer cells promotes lipogenesis and enhances innate immunity},
 volume = {4},
 year = {2021}
}


                

2020

Unravelling topological determinants of excitable dynamics on graphs using analytical mean-field approaches
Marc-Thorsten Hütt, Annick Lesne
Discrete and Continuous Models in the Theory of Networks, 2020.
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                    @incollection{hutt2020unravelling,
 author = {Hütt, Marc-Thorsten and Lesne, Annick},
 booktitle = {Discrete and Continuous Models in the Theory of Networks},
 pages = {179--198},
 publisher = {Birkhäuser, Cham},
 title = {Unravelling topological determinants of excitable dynamics on graphs using analytical mean-field approaches},
 year = {2020}
}


                
Selbstorganisation in Netzwerken -- von den Neurowissenschaften zur Systembiologie
Marc-Thorsten Hütt
Selbstorganisation–ein Paradigma für die Humanwissenschaften, 2020.
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                    @incollection{hutt2020selbstorganisation,
 author = {Hütt, Marc-Thorsten},
 booktitle = {Selbstorganisation--ein Paradigma für die Humanwissenschaften},
 date-modified = {2022-02-19 07:46:39 +0100},
 pages = {197--213},
 publisher = {Springer, Wiesbaden},
 title = {Selbstorganisation in Netzwerken -- von den Neurowissenschaften zur Systembiologie},
 year = {2020}
}


                
Multi-level assessment of obsessive-compulsive disorder (OCD) reveals relations between neural and neurochemical levels
Kathrin Viol, Günter Schiepek, Martin Kronbichler, Arnulf Hartl, Carina Grafetstätter, Peter Strasser, Anna Kastinger, Helmut Schöller, Eva-Maria Reiter, Sarah Said-Yürekli, et al.
BMC psychiatry, 2020.
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                    @article{viol2020multi,
 author = {Viol, Kathrin and Schiepek, Günter and Kronbichler, Martin and Hartl, Arnulf and Grafetstätter, Carina and Strasser, Peter and Kastinger, Anna and Schöller, Helmut and Reiter, Eva-Maria and Said-Yürekli, Sarah and others},
 date-modified = {2022-02-19 07:47:11 +0100},
 journal = {BMC psychiatry},
 number = {1},
 pages = {1--12},
 publisher = {BioMed Central},
 title = {Multi-level assessment of obsessive-compulsive disorder (OCD) reveals relations between neural and neurochemical levels},
 volume = {20},
 year = {2020}
}


                
Lipogenesis and innate immunity in hepatocellular carcinoma cells reprogrammed by an isoenzyme switch of hexokinases
Laure Perrin-Cocon, Pierre-Olivier Vidalain, Clémence Jacquemin, Anne Aublin-Gex, Keedrian Olmstead, Baptiste Panthu, Gilles JP Rautureau, Patrice André, Piotr Nyczka, Marc-Thorsten Hütt, et al.
bioRxiv, 2020.
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                    @article{perrin2020lipogenesis,
 author = {Perrin-Cocon, Laure and Vidalain, Pierre-Olivier and Jacquemin, Clémence and Aublin-Gex, Anne and Olmstead, Keedrian and Panthu, Baptiste and Rautureau, Gilles JP and André, Patrice and Nyczka, Piotr and Hütt, Marc-Thorsten and others},
 journal = {bioRxiv},
 publisher = {Cold Spring Harbor Laboratory},
 title = {Lipogenesis and innate immunity in hepatocellular carcinoma cells reprogrammed by an isoenzyme switch of hexokinases},
 year = {2020}
}


                
Link-usage asymmetry and collective patterns emerging from rich-club organization of complex networks
Paolo Moretti, Marc-Thorsten Hütt
Proceedings of the National Academy of Sciences, 2020.
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                    @article{moretti2020link,
 author = {Moretti, Paolo and Hütt, Marc-Thorsten},
 journal = {Proceedings of the National Academy of Sciences},
 number = {31},
 pages = {18332--18340},
 publisher = {National Academy of Sciences},
 title = {Link-usage asymmetry and collective patterns emerging from rich-club organization of complex networks},
 volume = {117},
 year = {2020}
}


                
Grundlagen konnektiver komplexer Systeme
Marc-Thorsten Hütt
Philosophisches Handbuch Künstliche Intelligenz, 2020.
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                    @article{hutt2020grundlagen,
 author = {Hütt, Marc-Thorsten},
 journal = {Philosophisches Handbuch Künstliche Intelligenz},
 pages = {1--21},
 publisher = {Springer Fachmedien Wiesbaden},
 title = {Grundlagen konnektiver komplexer Systeme},
 year = {2020}
}


                
Generative network model of transcriptome patterns in disease cohorts with tunable signal strength
Piotr Nyczka, Marc-Thorsten Hütt
Physical Review Research, 2020.
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                    @article{nyczka2020generative,
 author = {Nyczka, Piotr and Hütt, Marc-Thorsten},
 journal = {Physical Review Research},
 number = {3},
 pages = {033130},
 publisher = {American Physical Society},
 title = {Generative network model of transcriptome patterns in disease cohorts with tunable signal strength},
 volume = {2},
 year = {2020}
}


                
Gene regulatory network.
Marc-Thorsten Hütt, Annick Lesne
Elsevier, 2020.
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                    @misc{hutt2020gene,
 author = {Hütt, Marc-Thorsten and Lesne, Annick},
 publisher = {Elsevier},
 title = {Gene regulatory network.},
 year = {2020}
}


                
Fairness von KI-Algorithmen
Marc-Thorsten Hütt, Claudia Schubert
Philosophisches Handbuch Künstliche Intelligenz, 2020.
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                    @article{hutt2020fairness,
 author = {Hütt, Marc-Thorsten and Schubert, Claudia},
 journal = {Philosophisches Handbuch Künstliche Intelligenz},
 pages = {1--22},
 publisher = {Springer Fachmedien Wiesbaden},
 title = {Fairness von KI-Algorithmen},
 year = {2020}
}


                
Chromosomal origin of replication coordinates logically distinct types of bacterial genetic regulation
Kosmas Kosmidis, Kim Philipp Jablonski, Georgi Muskhelishvili, Marc-Thorsten Hütt
NPJ systems biology and applications, 2020.
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                    @article{kosmidis2020chromosomal,
 author = {Kosmidis, Kosmas and Jablonski, Kim Philipp and Muskhelishvili, Georgi and Hütt, Marc-Thorsten},
 journal = {NPJ systems biology and applications},
 number = {1},
 pages = {1--9},
 publisher = {Nature Publishing Group},
 title = {Chromosomal origin of replication coordinates logically distinct types of bacterial genetic regulation},
 volume = {6},
 year = {2020}
}


                

2019

Visual Analytics of Simulation Ensembles for Network Dynamics.
Quynh Quang Ngo, Marc-Thorsten Hütt, Lars Linsen
VMV, 2019.
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                    @inproceedings{ngo2019visual,
 author = {Ngo, Quynh Quang and Hütt, Marc-Thorsten and Linsen, Lars},
 booktitle = {VMV},
 pages = {89--97},
 title = {Visual Analytics of Simulation Ensembles for Network Dynamics.},
 year = {2019}
}


                
Topological reinforcement as a principle of modularity emergence in brain networks
Fabrizio Damicelli, Claus C Hilgetag, Marc-Thorsten Hütt, Arnaud Messé
Network Neuroscience, 2019.
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                    @article{damicelli2019topological,
 author = {Damicelli, Fabrizio and Hilgetag, Claus C and Hütt, Marc-Thorsten and Messé, Arnaud},
 journal = {Network Neuroscience},
 number = {2},
 pages = {589--605},
 publisher = {MIT Press One Rogers Street, Cambridge, MA 02142-1209, USA journals-info~łdots},
 title = {Topological reinforcement as a principle of modularity emergence in brain networks},
 volume = {3},
 year = {2019}
}


                
The metabolic network coherence of human transcriptomes is associated with genetic variation at the cadherin 18 locus
Kristina Schlicht, Piotr Nyczka, Amke Caliebe, Sandra Freitag-Wolf, Annique Claringbould, Lude Franke, Urmo Võsa, Sharon LR Kardia, Jennifer A Smith, Wei Zhao, et al.
Human genetics, 2019.
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                    @article{schlicht2019metabolic,
 author = {Schlicht, Kristina and Nyczka, Piotr and Caliebe, Amke and Freitag-Wolf, Sandra and Claringbould, Annique and Franke, Lude and Võsa, Urmo and Kardia, Sharon LR and Smith, Jennifer A and Zhao, Wei and others},
 journal = {Human genetics},
 number = {4},
 pages = {375--388},
 publisher = {Springer Berlin Heidelberg},
 title = {The metabolic network coherence of human transcriptomes is associated with genetic variation at the cadherin 18 locus},
 volume = {138},
 year = {2019}
}


                
The E. coli transcriptional regulatory network and its spatial embedding
Kosmas Kosmidis, Marc-Thorsten Hütt
The European Physical Journal E, 2019.
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                    @article{kosmidis2019coli,
 author = {Kosmidis, Kosmas and Hütt, Marc-Thorsten},
 date-modified = {2022-02-19 07:47:23 +0100},
 journal = {The European Physical Journal E},
 number = {3},
 pages = {1--9},
 publisher = {Springer Berlin Heidelberg},
 title = {The E. coli transcriptional regulatory network and its spatial embedding},
 volume = {42},
 year = {2019}
}


                
Modular organization and emergence in systems biology
Marc-Thorsten Hütt
Emergence and modularity in life sciences, 2019.
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                    @incollection{hutt2019modular,
 author = {Hütt, Marc-Thorsten},
 booktitle = {Emergence and modularity in life sciences},
 pages = {37--49},
 publisher = {Springer, Cham},
 title = {Modular organization and emergence in systems biology},
 year = {2019}
}


                
Managing workflow of customer requirements using machine learning
Alexey Lyutov, Yilmaz Uygun, Marc-Thorsten Hütt
Computers in Industry, 2019.
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                    @article{lyutov2019managing,
 author = {Lyutov, Alexey and Uygun, Yilmaz and Hütt, Marc-Thorsten},
 journal = {Computers in Industry},
 pages = {215--225},
 publisher = {Elsevier},
 title = {Managing workflow of customer requirements using machine learning},
 volume = {109},
 year = {2019}
}


                
Economy-on-demand and the fairness of algorithms
Claudia Schubert, Marc-Thorsten Hütt
European Labour Law Journal, 2019.
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                    @article{schubert2019economy,
 author = {Schubert, Claudia and Hütt, Marc-Thorsten},
 journal = {European Labour Law Journal},
 number = {1},
 pages = {3--16},
 publisher = {SAGE Publications Sage UK: London, England},
 title = {Economy-on-demand and the fairness of algorithms},
 volume = {10},
 year = {2019}
}


                
An improved production planning approach under the consideration of production order interdependencies
Julia Bendul, Victor Vican, Marc-Thorsten Hütt
International Workshop on Service Orientation in Holonic and Multi-Agent Manufacturing, 2019.
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                    @inproceedings{bendul2019improved,
 author = {Bendul, Julia and Vican, Victor and Hütt, Marc-Thorsten},
 booktitle = {International Workshop on Service Orientation in Holonic and Multi-Agent Manufacturing},
 organization = {Springer, Cham},
 pages = {232--243},
 title = {An improved production planning approach under the consideration of production order interdependencies},
 year = {2019}
}


                
A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli
Anne Grimbs, David F Klosik, Stefan Bornholdt, Marc-Thorsten Hütt
PLoS computational biology, 2019.
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                    @article{grimbs2019system,
 author = {Grimbs, Anne and Klosik, David F and Bornholdt, Stefan and Hütt, Marc-Thorsten},
 journal = {PLoS computational biology},
 number = {5},
 pages = {e1006962},
 publisher = {Public Library of Science},
 title = {A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli},
 volume = {15},
 year = {2019}
}


                
A nonlinear dynamic systems model of psychotherapy: First steps toward validation and the role of external input.
Helmut Schöller, Kathrin Viol, Hannes Goditsch, Wolfgang Aichhorn, Marc-Thorsten Hütt, Günter Schiepek
Nonlinear Dynamics, Psychology, and Life Sciences, 2019.
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                    @article{scholler2019nonlinear,
 author = {Schöller, Helmut and Viol, Kathrin and Goditsch, Hannes and Aichhorn, Wolfgang and Hütt, Marc-Thorsten and Schiepek, Günter},
 journal = {Nonlinear Dynamics, Psychology, and Life Sciences},
 publisher = {Society for Chaos Theory in Psychology & Life Sciences},
 title = {A nonlinear dynamic systems model of psychotherapy: First steps toward validation and the role of external input.},
 year = {2019}
}


                

2018

Understanding synchronizability of manufacturing networks: A multi-method study on structural network properties
Stanislav Chankov, Marc-Thorsten Hütt, Julia Bendul
Journal of manufacturing systems, 2018.
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                    @article{chankov2018understanding,
 author = {Chankov, Stanislav and Hütt, Marc-Thorsten and Bendul, Julia},
 journal = {Journal of manufacturing systems},
 pages = {127--136},
 publisher = {Elsevier},
 title = {Understanding synchronizability of manufacturing networks: A multi-method study on structural network properties},
 volume = {46},
 year = {2018}
}


                
Toward a theory of coactivation patterns in excitable neural networks
Arnaud Messé, Marc-Thorsten Hütt, Claus C Hilgetag
PLoS computational biology, 2018.
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                    @article{messe2018toward,
 author = {Messé, Arnaud and Hütt, Marc-Thorsten and Hilgetag, Claus C},
 journal = {PLoS computational biology},
 number = {4},
 pages = {e1006084},
 publisher = {Public Library of Science},
 title = {Toward a theory of coactivation patterns in excitable neural networks},
 volume = {14},
 year = {2018}
}


                
The balance of autonomous and centralized control in scheduling problems
Henning Blunck, Dieter Armbruster, Julia Bendul, Marc-Thorsten Hütt
Applied Network Science, 2018.
Cite Google Scholar

Cite

                    @article{blunck2018balance,
 author = {Blunck, Henning and Armbruster, Dieter and Bendul, Julia and Hütt, Marc-Thorsten},
 journal = {Applied Network Science},
 number = {1},
 pages = {1--19},
 publisher = {SpringerOpen},
 title = {The balance of autonomous and centralized control in scheduling problems},
 volume = {3},
 year = {2018}
}


                
Personality development in psychotherapy: a synergetic model of state-trait dynamics
Helmut Schöller, Kathrin Viol, Wolfgang Aichhorn, Marc-Thorsten Hütt, Günter Schiepek
Cognitive Neurodynamics, 2018.
Cite Google Scholar

Cite

                    @article{scholler2018personality,
 author = {Schöller, Helmut and Viol, Kathrin and Aichhorn, Wolfgang and Hütt, Marc-Thorsten and Schiepek, Günter},
 journal = {Cognitive Neurodynamics},
 number = {5},
 pages = {441--459},
 publisher = {Springer Netherlands},
 title = {Personality development in psychotherapy: a synergetic model of state-trait dynamics},
 volume = {12},
 year = {2018}
}


                
Influencing factors of synchronization in manufacturing systems
Stanislav Chankov, Marc-Thorsten Hütt, Julia Bendul
International Journal of Production Research, 2018.
Cite Google Scholar

Cite

                    @article{chankov2018influencing,
 author = {Chankov, Stanislav and Hütt, Marc-Thorsten and Bendul, Julia},
 journal = {International Journal of Production Research},
 number = {14},
 pages = {4781--4801},
 publisher = {Taylor & Francis},
 title = {Influencing factors of synchronization in manufacturing systems},
 volume = {56},
 year = {2018}
}


                
Drawing a map of invasion biology based on a network of hypotheses
Martin Enders, Marc-Thorsten Hütt, Jonathan M Jeschke
Ecosphere, 2018.
Cite Google Scholar

Cite

                    @article{enders2018drawing,
 author = {Enders, Martin and Hütt, Marc-Thorsten and Jeschke, Jonathan M},
 journal = {Ecosphere},
 number = {3},
 pages = {e02146},
 title = {Drawing a map of invasion biology based on a network of hypotheses},
 volume = {9},
 year = {2018}
}


                
Connectivity and complex systems: learning from a multi-disciplinary perspective
Laura Turnbull, Marc-Thorsten Hütt, Andreas A Ioannides, Stuart Kininmonth, Ronald Poeppl, Klement Tockner, Louise J Bracken, Saskia Keesstra, Lichan Liu, Rens Masselink, et al.
Applied Network Science, 2018.
Cite Google Scholar

Cite

                    @article{turnbull2018connectivity,
 author = {Turnbull, Laura and Hütt, Marc-Thorsten and Ioannides, Andreas A and Kininmonth, Stuart and Poeppl, Ronald and Tockner, Klement and Bracken, Louise J and Keesstra, Saskia and Liu, Lichan and Masselink, Rens and others},
 journal = {Applied Network Science},
 number = {1},
 pages = {1--49},
 publisher = {SpringerOpen},
 title = {Connectivity and complex systems: learning from a multi-disciplinary perspective},
 volume = {3},
 year = {2018}
}


                
A mathematical model of cocoa bean fermentation
Mauricio Moreno-Zambrano, Sergio Grimbs, Matthias S Ullrich, Marc-Thorsten Hütt
Royal Society open science, 2018.
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Cite

                    @article{moreno2018mathematical,
 author = {Moreno-Zambrano, Mauricio and Grimbs, Sergio and Ullrich, Matthias S and Hütt, Marc-Thorsten},
 journal = {Royal Society open science},
 number = {10},
 pages = {180964},
 publisher = {The Royal Society},
 title = {A mathematical model of cocoa bean fermentation},
 volume = {5},
 year = {2018}
}


                

2017

Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease
Robert Häsler, Raheleh Sheibani-Tezerji, Anupam Sinha, Matthias Barann, Ateequr Rehman, Daniela Esser, Konrad Aden, Carolin Knecht, Berenice Brandt, Susanna Nikolaus, et al.
Gut, 2017.
Cite Google Scholar

Cite

                    @article{hasler2017uncoupling,
 author = {Häsler, Robert and Sheibani-Tezerji, Raheleh and Sinha, Anupam and Barann, Matthias and Rehman, Ateequr and Esser, Daniela and Aden, Konrad and Knecht, Carolin and Brandt, Berenice and Nikolaus, Susanna and others},
 journal = {Gut},
 number = {12},
 pages = {2087--2097},
 publisher = {BMJ Publishing Group},
 title = {Uncoupling of mucosal gene regulation, mRNA splicing and adherent microbiota signatures in inflammatory bowel disease},
 volume = {66},
 year = {2017}
}


                
Topological determinants of self-sustained activity in a simple model of excitable dynamics on graphs
Christoph Fretter, Annick Lesne, Claus C Hilgetag, Marc-Thorsten Hütt
Scientific reports, 2017.
Cite Google Scholar

Cite

                    @article{fretter2017topological,
 author = {Fretter, Christoph and Lesne, Annick and Hilgetag, Claus C and Hütt, Marc-Thorsten},
 journal = {Scientific reports},
 number = {1},
 pages = {1--11},
 publisher = {Nature Publishing Group},
 title = {Topological determinants of self-sustained activity in a simple model of excitable dynamics on graphs},
 volume = {7},
 year = {2017}
}


                
The interdependent network of gene regulation and metabolism is robust where it needs to be
David F Klosik, Anne Grimbs, Stefan Bornholdt, Marc-Thorsten Hütt
Nature communications, 2017.
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Cite

                    @article{klosik2017interdependent,
 author = {Klosik, David F and Grimbs, Anne and Bornholdt, Stefan and Hütt, Marc-Thorsten},
 journal = {Nature communications},
 number = {1},
 pages = {1--9},
 publisher = {Nature Publishing Group},
 title = {The interdependent network of gene regulation and metabolism is robust where it needs to be},
 volume = {8},
 year = {2017}
}


                
Psychotherapy is chaotic---(not only) in a computational world
Günter K Schiepek, Kathrin Viol, Wolfgang Aichhorn, Marc-Thorsten Hütt, Katharina Sungler, David Pincus, Helmut J Schöller
Frontiers in Psychology, 2017.
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Cite

                    @article{schiepek2017psychotherapy,
 author = {Schiepek, Günter K and Viol, Kathrin and Aichhorn, Wolfgang and Hütt, Marc-Thorsten and Sungler, Katharina and Pincus, David and Schöller, Helmut J},
 journal = {Frontiers in Psychology},
 pages = {379},
 publisher = {Frontiers},
 title = {Psychotherapy is chaotic---(not only) in a computational world},
 volume = {8},
 year = {2017}
}


                
Modular topology emerges from plasticity in a minimalistic excitable network model
Fabrizio Damicelli, Claus C Hilgetag, Marc-Thorsten Hütt, Arnaud Messé
Chaos: An Interdisciplinary Journal of Nonlinear Science, 2017.
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Cite

                    @article{damicelli2017modular,
 author = {Damicelli, Fabrizio and Hilgetag, Claus C and Hütt, Marc-Thorsten and Messé, Arnaud},
 journal = {Chaos: An Interdisciplinary Journal of Nonlinear Science},
 number = {4},
 pages = {047406},
 publisher = {AIP Publishing LLC},
 title = {Modular topology emerges from plasticity in a minimalistic excitable network model},
 volume = {27},
 year = {2017}
}


                
Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases
Christian R Bauer, Carolin Knecht, Christoph Fretter, Benjamin Baum, Sandra Jendrossek, Malte Rühlemann, Femke-Anouska Heinsen, Nadine Umbach, Bodo Grimbacher, Andre Franke, et al.
Briefings in bioinformatics, 2017.
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Cite

                    @article{bauer2017interdisciplinary,
 author = {Bauer, Christian R and Knecht, Carolin and Fretter, Christoph and Baum, Benjamin and Jendrossek, Sandra and Rühlemann, Malte and Heinsen, Femke-Anouska and Umbach, Nadine and Grimbacher, Bodo and Franke, Andre and others},
 journal = {Briefings in bioinformatics},
 number = {3},
 pages = {479--487},
 publisher = {Oxford University Press},
 title = {Interdisciplinary approach towards a systems medicine toolbox using the example of inflammatory diseases},
 volume = {18},
 year = {2017}
}


                
Genome supranucleosomal organization and genetic susceptibility to diseases
Kim Philipp Jablonski, Christoph Fretter, Leopold Carron, Thierry Forné, M-T Hütt, Annick Lesne
AIP Conference Proceedings, 2017.
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Cite

                    @inproceedings{jablonski2017genome,
 author = {Jablonski, Kim Philipp and Fretter, Christoph and Carron, Leopold and Forné, Thierry and Hütt, M-T and Lesne, Annick},
 booktitle = {AIP Conference Proceedings},
 number = {1},
 organization = {AIP Publishing LLC},
 pages = {020027},
 title = {Genome supranucleosomal organization and genetic susceptibility to diseases},
 volume = {1882},
 year = {2017}
}


                
Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome
Jens Christian Claussen, Jurgita Skiecevičienė, Jun Wang, Philipp Rausch, Tom H Karlsen, Wolfgang Lieb, John F Baines, Andre Franke, Marc-Thorsten Hütt
PLoS computational biology, 2017.
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Cite

                    @article{claussen2017boolean,
 author = {Claussen, Jens Christian and Skiecevičienė, Jurgita and Wang, Jun and Rausch, Philipp and Karlsen, Tom H and Lieb, Wolfgang and Baines, John F and Franke, Andre and Hütt, Marc-Thorsten},
 journal = {PLoS computational biology},
 number = {6},
 pages = {e1005361},
 publisher = {Public Library of Science San Francisco, CA USA},
 title = {Boolean analysis reveals systematic interactions among low-abundance species in the human gut microbiome},
 volume = {13},
 year = {2017}
}


                
Bioactivity in Rhododendron: A systemic analysis of antimicrobial and cytotoxic activities and their phylogenetic and phytochemical origins
Anne Grimbs, Abhinandan Shrestha, Ahmed SD Rezk, Sergio Grimbs, Inamullah Hakeem Said, Hartwig Schepker, Marc-Thorsten Hütt, Dirk C Albach, Klaudia Brix, Nikolai Kuhnert, et al.
Frontiers in plant science, 2017.
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Cite

                    @article{grimbs2017bioactivity,
 author = {Grimbs, Anne and Shrestha, Abhinandan and Rezk, Ahmed SD and Grimbs, Sergio and Hakeem Said, Inamullah and Schepker, Hartwig and Hütt, Marc-Thorsten and Albach, Dirk C and Brix, Klaudia and Kuhnert, Nikolai and others},
 journal = {Frontiers in plant science},
 pages = {551},
 publisher = {Frontiers},
 title = {Bioactivity in Rhododendron: A systemic analysis of antimicrobial and cytotoxic activities and their phylogenetic and phytochemical origins},
 volume = {8},
 year = {2017}
}


                

2016

Visual analysis of governing topological structures in excitable network dynamics
Quynh Quang Ngo, Marc-Thorsten Hütt, Lars Linsen
Computer Graphics Forum, 2016.
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Cite

                    @inproceedings{ngo2016visual,
 author = {Ngo, Quynh Quang and Hütt, Marc-Thorsten and Linsen, Lars},
 booktitle = {Computer Graphics Forum},
 number = {3},
 pages = {301--310},
 title = {Visual analysis of governing topological structures in excitable network dynamics},
 volume = {35},
 year = {2016}
}


                
The physics behind systems biology
Nicole E Radde, Marc-Thorsten Hütt
EPJ Nonlinear Biomedical Physics, 2016.
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Cite

                    @article{radde2016physics,
 author = {Radde, Nicole E and Hütt, Marc-Thorsten},
 journal = {EPJ Nonlinear Biomedical Physics},
 number = {1},
 pages = {7},
 publisher = {Springer Berlin Heidelberg},
 title = {The physics behind systems biology},
 volume = {4},
 year = {2016}
}


                
The elementary flux modes of a manufacturing system: a novel approach to explore the relationship of network structure and function
Mirja Meyer, Marc-Thorsten Hütt, Julia Bendul
International Journal of Production Research, 2016.
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Cite

                    @article{meyer2016elementary,
 author = {Meyer, Mirja and Hütt, Marc-Thorsten and Bendul, Julia},
 journal = {International Journal of Production Research},
 number = {14},
 pages = {4145--4160},
 publisher = {Taylor & Francis},
 title = {The elementary flux modes of a manufacturing system: a novel approach to explore the relationship of network structure and function},
 volume = {54},
 year = {2016}
}


                
Synchronization in manufacturing systems: quantification and relation to logistics performance
Stanislav Chankov, Marc-Thorsten Hütt, Julia Bendul
International Journal of Production Research, 2016.
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Cite

                    @article{chankov2016synchronization,
 author = {Chankov, Stanislav and Hütt, Marc-Thorsten and Bendul, Julia},
 journal = {International Journal of Production Research},
 number = {20},
 pages = {6033--6051},
 publisher = {Taylor & Francis},
 title = {Synchronization in manufacturing systems: quantification and relation to logistics performance},
 volume = {54},
 year = {2016}
}


                
Interplay of digital and analog control in time-resolved gene expression profiles
Moritz E Beber, Patrick Sobetzko, Georgi Muskhelishvili, Marc-Thorsten Hütt
EPJ Nonlinear Biomedical Physics, 2016.
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Cite

                    @article{beber2016interplay,
 author = {Beber, Moritz E and Sobetzko, Patrick and Muskhelishvili, Georgi and Hütt, Marc-Thorsten},
 journal = {EPJ Nonlinear Biomedical Physics},
 number = {1},
 pages = {8},
 publisher = {Springer Berlin Heidelberg},
 title = {Interplay of digital and analog control in time-resolved gene expression profiles},
 volume = {4},
 year = {2016}
}


                
Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB
Moritz E Beber, Georgi Muskhelishvili, Marc-Thorsten Hütt
Database, 2016.
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Cite

                    @article{beber2016effect,
 author = {Beber, Moritz E and Muskhelishvili, Georgi and Hütt, Marc-Thorsten},
 date-modified = {2022-02-19 07:49:19 +0100},
 journal = {Database},
 publisher = {Oxford Academic},
 title = {Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB},
 volume = {2016},
 year = {2016}
}


                
Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls
Carolin Knecht, Christoph Fretter, Philip Rosenstiel, Michael Krawczak, Marc-Thorsten Hütt
Scientific reports, 2016.
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                    @article{knecht2016distinct,
 author = {Knecht, Carolin and Fretter, Christoph and Rosenstiel, Philip and Krawczak, Michael and Hütt, Marc-Thorsten},
 journal = {Scientific reports},
 number = {1},
 pages = {1--11},
 publisher = {Nature Publishing Group},
 title = {Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls},
 volume = {6},
 year = {2016}
}


                

2015

Regulation of spatiotemporal patterns by biological variability: General principles and applications to Dictyostelium discoideum
Miriam Grace, Marc-Thorsten Hütt
PLoS computational biology, 2015.
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                    @article{grace2015regulation,
 author = {Grace, Miriam and Hütt, Marc-Thorsten},
 journal = {PLoS computational biology},
 number = {11},
 pages = {e1004367},
 publisher = {Public Library of Science San Francisco, CA USA},
 title = {Regulation of spatiotemporal patterns by biological variability: General principles and applications to Dictyostelium discoideum},
 volume = {11},
 year = {2015}
}


                
Noise-induced phenomena and complex rhythms: a test scenario for plant systems biology
Marc-Thorsten Hütt, Ulrich Lüttge, Michel Thellier
Rhythms in plants, 2015.
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Cite

                    @incollection{hutt2015noise,
 author = {Hütt, Marc-Thorsten and Lüttge, Ulrich and Thellier, Michel},
 booktitle = {Rhythms in plants},
 pages = {279--321},
 publisher = {Springer, Cham},
 title = {Noise-induced phenomena and complex rhythms: a test scenario for plant systems biology},
 year = {2015}
}


                
Node survival in networks under correlated attacks
Yan Hao, Dieter Armbruster, Marc-Thorsten Hütt
PloS one, 2015.
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                    @article{hao2015node,
 author = {Hao, Yan and Armbruster, Dieter and Hütt, Marc-Thorsten},
 journal = {PloS one},
 number = {5},
 pages = {e0125467},
 publisher = {Public Library of Science San Francisco, CA USA},
 title = {Node survival in networks under correlated attacks},
 volume = {10},
 year = {2015}
}


                
Network heterogeneity and node capacity lead to heterogeneous scaling of fluctuations in random walks on graphs
Kosmas Kosmidis, Moritz Beber, Marc-Thorsten Hütt
Advances in Complex Systems, 2015.
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Cite

                    @article{kosmidis2015network,
 author = {Kosmidis, Kosmas and Beber, Moritz and Hütt, Marc-Thorsten},
 journal = {Advances in Complex Systems},
 number = {01n02},
 pages = {1550007},
 publisher = {World Scientific Publishing Company},
 title = {Network heterogeneity and node capacity lead to heterogeneous scaling of fluctuations in random walks on graphs},
 volume = {18},
 year = {2015}
}


                
Methoden der Bioinformatik: eine Einführung zur Anwendung in Biologie und Medizin
Marc-Thorsten Hütt, Manuel Dehnert
Springer-Verlag, 2015.
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Cite

                    @misc{hutt2015methoden,
 author = {Hütt, Marc-Thorsten and Dehnert, Manuel},
 date-modified = {2022-02-19 07:49:52 +0100},
 publisher = {Springer-Verlag},
 title = {Methoden der Bioinformatik: eine Einführung zur Anwendung in Biologie und Medizin},
 year = {2015}
}


                
A closer look at the apparent correlation of structural and functional connectivity in excitable neural networks
Arnaud Messé, Marc-Thorsten Hütt, Peter König, Claus C Hilgetag
Scientific reports, 2015.
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Cite

                    @article{messe2015closer,
 author = {Messé, Arnaud and Hütt, Marc-Thorsten and König, Peter and Hilgetag, Claus C},
 journal = {Scientific reports},
 number = {1},
 pages = {1--5},
 publisher = {Nature Publishing Group},
 title = {A closer look at the apparent correlation of structural and functional connectivity in excitable neural networks},
 volume = {5},
 year = {2015}
}


                

2014

Understanding genetic variation--the value of systems biology
Marc-Thorsten Hütt
British journal of clinical pharmacology, 2014.
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Cite

                    @article{hutt2014understanding,
 author = {Hütt, Marc-Thorsten},
 journal = {British journal of clinical pharmacology},
 number = {4},
 pages = {597--605},
 title = {Understanding genetic variation--the value of systems biology},
 volume = {77},
 year = {2014}
}


                
Role of long cycles in excitable dynamics on graphs
Guadalupe C Garcia, Annick Lesne, Claus C Hilgetag, Marc-Thorsten Hütt
Physical Review E, 2014.
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Cite

                    @article{garcia2014role,
 author = {Garcia, Guadalupe C and Lesne, Annick and Hilgetag, Claus C and Hütt, Marc-Thorsten},
 journal = {Physical Review E},
 number = {5},
 pages = {052805},
 publisher = {American Physical Society},
 title = {Role of long cycles in excitable dynamics on graphs},
 volume = {90},
 year = {2014}
}


                
Perspective: network-guided pattern formation of neural dynamics
Marc-Thorsten Hütt, Marcus Kaiser, Claus C Hilgetag
Philosophical Transactions of the Royal Society B: Biological Sciences, 2014.
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Cite

                    @article{hutt2014perspective,
 author = {Hütt, Marc-Thorsten and Kaiser, Marcus and Hilgetag, Claus C},
 journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
 number = {1653},
 pages = {20130522},
 publisher = {The Royal Society},
 title = {Perspective: network-guided pattern formation of neural dynamics},
 volume = {369},
 year = {2014}
}


                
Pattern competition as a driver of diversity-induced resonance
Miriam Grace, Marc-Thorsten Hütt
The European Physical Journal B, 2014.
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Cite

                    @article{grace2014pattern,
 author = {Grace, Miriam and Hütt, Marc-Thorsten},
 journal = {The European Physical Journal B},
 number = {2},
 pages = {1--9},
 publisher = {Springer Berlin Heidelberg},
 title = {Pattern competition as a driver of diversity-induced resonance},
 volume = {87},
 year = {2014}
}


                
Motif-based success scores in coauthorship networks are highly sensitive to author name disambiguation
David F Klosik, Stefan Bornholdt, Marc-Thorsten Hütt
Physical Review E, 2014.
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Cite

                    @article{klosik2014motif,
 author = {Klosik, David F and Bornholdt, Stefan and Hütt, Marc-Thorsten},
 journal = {Physical Review E},
 number = {3},
 pages = {032811},
 publisher = {American Physical Society},
 title = {Motif-based success scores in coauthorship networks are highly sensitive to author name disambiguation},
 volume = {90},
 year = {2014}
}


                
Hierarchical modular brain connectivity is a stretch for criticality
Claus C Hilgetag, Marc-Thorsten Hütt
Trends in cognitive sciences, 2014.
Cite Google Scholar

Cite

                    @article{hilgetag2014hierarchical,
 author = {Hilgetag, Claus C and Hütt, Marc-Thorsten},
 journal = {Trends in cognitive sciences},
 number = {3},
 pages = {114--115},
 publisher = {Elsevier Current Trends},
 title = {Hierarchical modular brain connectivity is a stretch for criticality},
 volume = {18},
 year = {2014}
}


                
A genome signature derived from the interplay of word frequencies and symbol correlations
Simon Möller, Heike Hameister, Marc-Thorsten Hütt
Physica A: Statistical Mechanics and its Applications, 2014.
Cite Google Scholar

Cite

                    @article{moller2014genome,
 author = {Möller, Simon and Hameister, Heike and Hütt, Marc-Thorsten},
 journal = {Physica A: Statistical Mechanics and its Applications},
 pages = {216--226},
 publisher = {North-Holland},
 title = {A genome signature derived from the interplay of word frequencies and symbol correlations},
 volume = {414},
 year = {2014}
}


                

2013

The prescribed output pattern regulates the modular structure of flow networks
Moritz Emanuel Beber, Dieter Armbruster, Marc-Thorsten Hütt
The European Physical Journal B, 2013.
Cite Google Scholar

Cite

                    @article{beber2013prescribed,
 author = {Beber, Moritz Emanuel and Armbruster, Dieter and Hütt, Marc-Thorsten},
 journal = {The European Physical Journal B},
 number = {11},
 pages = {1--9},
 publisher = {Springer Berlin Heidelberg},
 title = {The prescribed output pattern regulates the modular structure of flow networks},
 volume = {86},
 year = {2013}
}


                
Predictability of spatio-temporal patterns in a lattice of coupled FitzHugh--Nagumo oscillators
Miriam Grace, Marc-Thorsten Hütt
Journal of The Royal Society Interface, 2013.
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Cite

                    @article{grace2013predictability,
 author = {Grace, Miriam and Hütt, Marc-Thorsten},
 journal = {Journal of The Royal Society Interface},
 number = {81},
 pages = {20121016},
 publisher = {The Royal Society},
 title = {Predictability of spatio-temporal patterns in a lattice of coupled FitzHugh--Nagumo oscillators},
 volume = {10},
 year = {2013}
}


                
Model Complexity in the Study of Neural Network Phenomena
Claus C Hilgetag, Marc-Thorsten Hütt, Changsong Zhou
Advances in Cognitive Neurodynamics (III), 2013.
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Cite

                    @incollection{hilgetag2013model,
 author = {Hilgetag, Claus C and Hütt, Marc-Thorsten and Zhou, Changsong},
 booktitle = {Advances in Cognitive Neurodynamics (III)},
 pages = {77--81},
 publisher = {Springer, Dordrecht},
 title = {Model Complexity in the Study of Neural Network Phenomena},
 year = {2013}
}


                
How do production systems in biological cells maintain their function in changing environments?
Moritz Emanuel Beber, Marc-Thorsten Hütt
Robust Manufacturing Control, 2013.
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Cite

                    @incollection{beber2013production,
 author = {Beber, Moritz Emanuel and Hütt, Marc-Thorsten},
 booktitle = {Robust Manufacturing Control},
 pages = {3--16},
 publisher = {Springer, Berlin, Heidelberg},
 title = {How do production systems in biological cells maintain their function in changing environments?},
 year = {2013}
}


                
Datenanalyse in der Biologie: eine Einführung in Methoden der nichtlinearen Dynamik, fraktalen Geometrie und Informationstheorie
Marc-Thorsten Hütt
Springer-Verlag, 2013.
Cite Google Scholar

Cite

                    @misc{hutt2013datenanalyse,
 author = {Hütt, Marc-Thorsten},
 publisher = {Springer-Verlag},
 title = {Datenanalyse in der Biologie: eine Einführung in Methoden der nichtlinearen Dynamik, fraktalen Geometrie und Informationstheorie},
 year = {2013}
}


                
A comparison of network characteristics in metabolic and manufacturing systems
Till Becker, Mirja Meyer, Moritz E Beber, Katja Windt, Marc-Thorsten Hütt
Dynamics in Logistics, 2013.
Cite Google Scholar

Cite

                    @incollection{becker2013comparison,
 author = {Becker, Till and Meyer, Mirja and Beber, Moritz E and Windt, Katja and Hütt, Marc-Thorsten},
 booktitle = {Dynamics in Logistics},
 pages = {141--150},
 publisher = {Springer, Berlin, Heidelberg},
 title = {A comparison of network characteristics in metabolic and manufacturing systems},
 year = {2013}
}


                

2012

The impact of network connectivity on performance in production logistic networks
Till Becker, Moritz Emanuel Beber, Katja Windt, Marc-Thorsten Hütt
CIRP Journal of Manufacturing Science and Technology, 2012.
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Cite

                    @article{becker2012impact,
 author = {Becker, Till and Beber, Moritz Emanuel and Windt, Katja and Hütt, Marc-Thorsten},
 journal = {CIRP Journal of Manufacturing Science and Technology},
 number = {4},
 pages = {309--318},
 publisher = {Elsevier},
 title = {The impact of network connectivity on performance in production logistic networks},
 volume = {5},
 year = {2012}
}


                
Subgraph fluctuations in random graphs
Christoph Fretter, Matthias Müller-Hannemann, Marc-Thorsten Hütt
Physical Review E, 2012.
Cite Google Scholar

Cite

                    @article{fretter2012subgraph,
 author = {Fretter, Christoph and Müller-Hannemann, Matthias and Hütt, Marc-Thorsten},
 journal = {Physical Review E},
 number = {5},
 pages = {056119},
 publisher = {APS},
 title = {Subgraph fluctuations in random graphs},
 volume = {85},
 year = {2012}
}


                
Stochastic resonance in discrete excitable dynamics on graphs
Marc-Thorsten Hütt, Mitul K Jain, Claus C Hilgetag, Annick Lesne
Chaos, Solitons & Fractals, 2012.
Cite Google Scholar

Cite

                    @article{hutt2012stochastic,
 author = {Hütt, Marc-Thorsten and Jain, Mitul K and Hilgetag, Claus C and Lesne, Annick},
 journal = {Chaos, Solitons & Fractals},
 number = {5},
 pages = {611--618},
 publisher = {Pergamon},
 title = {Stochastic resonance in discrete excitable dynamics on graphs},
 volume = {45},
 year = {2012}
}


                
Projection-based Visualization of Dynamical Processes on Networks.
Farshad Ghassemi Toosi, Fernando Vieira Paulovich, Marc-Thorsten Hütt, Lars Linsen
EuroVis (Short Papers), 2012.
Cite Google Scholar

Cite

                    @inproceedings{toosi2012projection,
 author = {Toosi, Farshad Ghassemi and Paulovich, Fernando Vieira and Hütt, Marc-Thorsten and Linsen, Lars},
 booktitle = {EuroVis (Short Papers)},
 title = {Projection-based Visualization of Dynamical Processes on Networks.},
 year = {2012}
}


                
Cellular automata on graphs: Topological properties of ER graphs evolved towards low-entropy dynamics
Carsten Marr, Marc-Thorsten Hütt
Entropy, 2012.
Cite Google Scholar

Cite

                    @article{marr2012cellular,
 author = {Marr, Carsten and Hütt, Marc-Thorsten},
 journal = {Entropy},
 number = {6},
 pages = {993--1010},
 publisher = {Molecular Diversity Preservation International},
 title = {Cellular automata on graphs: Topological properties of ER graphs evolved towards low-entropy dynamics},
 volume = {14},
 year = {2012}
}


                
Building blocks of self-sustained activity in a simple deterministic model of excitable neural networks
Guadalupe Clara Garcia, Annick Lesne, Marc-Thorsten Hütt, Claus C Hilgetag
Frontiers in computational neuroscience, 2012.
Cite Google Scholar

Cite

                    @article{garcia2012building,
 author = {Garcia, Guadalupe Clara and Lesne, Annick and Hütt, Marc-Thorsten and Hilgetag, Claus C},
 journal = {Frontiers in computational neuroscience},
 pages = {50},
 publisher = {Frontiers},
 title = {Building blocks of self-sustained activity in a simple deterministic model of excitable neural networks},
 volume = {6},
 year = {2012}
}


                
Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks
Moritz Emanuel Beber, Christoph Fretter, Shubham Jain, Nikolaus Sonnenschein, Matthias Müller-Hannemann, Marc-Thorsten Hütt
Journal of the Royal Society Interface, 2012.
Cite Google Scholar

Cite

                    @article{beber2012artefacts,
 author = {Beber, Moritz Emanuel and Fretter, Christoph and Jain, Shubham and Sonnenschein, Nikolaus and Müller-Hannemann, Matthias and Hütt, Marc-Thorsten},
 journal = {Journal of the Royal Society Interface},
 number = {77},
 pages = {3426--3435},
 publisher = {The Royal Society},
 title = {Artefacts in statistical analyses of network motifs: general framework and application to metabolic networks},
 volume = {9},
 year = {2012}
}


                
A topological characterization of medium-dependent essential metabolic reactions
Nikolaus Sonnenschein, Carsten Marr, Marc-Thorsten Hütt
Metabolites, 2012.
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Cite

                    @article{sonnenschein2012topological,
 author = {Sonnenschein, Nikolaus and Marr, Carsten and Hütt, Marc-Thorsten},
 journal = {Metabolites},
 number = {3},
 pages = {632--647},
 publisher = {Molecular Diversity Preservation International},
 title = {A topological characterization of medium-dependent essential metabolic reactions},
 volume = {2},
 year = {2012}
}


                
A network perspective on metabolic inconsistency
Nikolaus Sonnenschein, José Felipe Golib Dzib, Annick Lesne, Sebastian Eilebrecht, Sheerazed Boulkroun, Maria-Christina Zennaro, Arndt Benecke, Marc-Thorsten Hütt
BMC systems biology, 2012.
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Cite

                    @article{sonnenschein2012network,
 author = {Sonnenschein, Nikolaus and Golib Dzib, José Felipe and Lesne, Annick and Eilebrecht, Sebastian and Boulkroun, Sheerazed and Zennaro, Maria-Christina and Benecke, Arndt and Hütt, Marc-Thorsten},
 journal = {BMC systems biology},
 number = {1},
 pages = {1--13},
 publisher = {BioMed Central},
 title = {A network perspective on metabolic inconsistency},
 volume = {6},
 year = {2012}
}


                
A modeling approach to analyze redundancy in manufacturing systems
K Windt, M-T Hütt, M Meyer
Enabling Manufacturing Competitiveness and Economic Sustainability, 2012.
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Cite

                    @incollection{windt2012modeling,
 author = {Windt, K and Hütt, M-T and Meyer, M},
 booktitle = {Enabling Manufacturing Competitiveness and Economic Sustainability},
 pages = {493--498},
 publisher = {Springer, Berlin, Heidelberg},
 title = {A modeling approach to analyze redundancy in manufacturing systems},
 year = {2012}
}


                

2011

Motifs in co-authorship networks and their relation to the impact of scientific publications
Lachezar Krumov, Christoph Fretter, Matthias Müller-Hannemann, Karsten Weihe, M-T Hütt
The European Physical Journal B, 2011.
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Cite

                    @article{krumov2011motifs,
 author = {Krumov, Lachezar and Fretter, Christoph and Müller-Hannemann, Matthias and Weihe, Karsten and Hütt, M-T},
 journal = {The European Physical Journal B},
 number = {4},
 pages = {535--540},
 publisher = {Springer-Verlag},
 title = {Motifs in co-authorship networks and their relation to the impact of scientific publications},
 volume = {84},
 year = {2011}
}


                
Flow control by periodic devices: a unifying language for the description of traffic, production, and metabolic systems
Till Becker, Moritz E Beber, Katja Windt, Marc-Thorsten Hütt, Dirk Helbing
Journal of Statistical Mechanics: Theory and Experiment, 2011.
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Cite

                    @article{becker2011flow,
 author = {Becker, Till and Beber, Moritz E and Windt, Katja and Hütt, Marc-Thorsten and Helbing, Dirk},
 journal = {Journal of Statistical Mechanics: Theory and Experiment},
 number = {05},
 pages = {P05004},
 publisher = {IOP Publishing},
 title = {Flow control by periodic devices: a unifying language for the description of traffic, production, and metabolic systems},
 volume = {2011},
 year = {2011}
}


                
Exploring due date reliability in production systems using data mining methods adapted from gene expression analysis
Katja Windt, Marc-Thorsten Hütt
CIRP annals, 2011.
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Cite

                    @article{windt2011exploring,
 author = {Windt, Katja and Hütt, Marc-Thorsten},
 journal = {CIRP annals},
 number = {1},
 pages = {473--476},
 publisher = {Elsevier},
 title = {Exploring due date reliability in production systems using data mining methods adapted from gene expression analysis},
 volume = {60},
 year = {2011}
}


                
Dynamics of Hierarchical Neural Networks
Claus C Hilgetag, Mark Müller-Linow, Marc-Thorsten Hütt
Advances in Cognitive Neurodynamics (II), 2011.
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Cite

                    @incollection{hilgetag2011dynamics,
 author = {Hilgetag, Claus C and Müller-Linow, Mark and Hütt, Marc-Thorsten},
 booktitle = {Advances in Cognitive Neurodynamics (II)},
 pages = {215--219},
 publisher = {Springer, Dordrecht},
 title = {Dynamics of Hierarchical Neural Networks},
 year = {2011}
}


                
Asymmetric transition and time-scale separation in interlinked positive feedback loops
Pencho Yordanov, Stefka Tyanova, Marc-Thorsten Huett, Annick Lesne
International Journal of Bifurcation and Chaos, 2011.
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Cite

                    @article{yordanov2011asymmetric,
 author = {Yordanov, Pencho and Tyanova, Stefka and Huett, Marc-Thorsten and Lesne, Annick},
 journal = {International Journal of Bifurcation and Chaos},
 number = {07},
 pages = {1895--1905},
 publisher = {World Scientific Publishing Company},
 title = {Asymmetric transition and time-scale separation in interlinked positive feedback loops},
 volume = {21},
 year = {2011}
}


                
Analog regulation of metabolic demand
Nikolaus Sonnenschein, Marcel Geertz, Georgi Muskhelishvili, Marc-Thorsten Hütt
BMC systems biology, 2011.
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Cite

                    @article{sonnenschein2011analog,
 author = {Sonnenschein, Nikolaus and Geertz, Marcel and Muskhelishvili, Georgi and Hütt, Marc-Thorsten},
 journal = {BMC systems biology},
 number = {1},
 pages = {1--13},
 publisher = {BioMed Central},
 title = {Analog regulation of metabolic demand},
 volume = {5},
 year = {2011}
}


                

2010

Statistical evidence for ancestral correlation patterns
Andrea Kuhn, Manuel Dehnert, Werner E Helm, Marc-Thorsten Hütt
Biosystems, 2010.
Cite Google Scholar

Cite

                    @article{kuhn2010statistical,
 author = {Kuhn, Andrea and Dehnert, Manuel and Helm, Werner E and Hütt, Marc-Thorsten},
 journal = {Biosystems},
 number = {3},
 pages = {215--224},
 publisher = {Elsevier},
 title = {Statistical evidence for ancestral correlation patterns},
 volume = {100},
 year = {2010}
}


                
Phase synchronization in railway timetables
Christoph Fretter, Lachezar Krumov, Karsten Weihe, Matthias Müller-Hannemann, M-T Hütt
The European Physical Journal B, 2010.
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Cite

                    @article{fretter2010phase,
 author = {Fretter, Christoph and Krumov, Lachezar and Weihe, Karsten and Müller-Hannemann, Matthias and Hütt, M-T},
 journal = {The European Physical Journal B},
 number = {2},
 pages = {281--289},
 publisher = {Springer-Verlag},
 title = {Phase synchronization in railway timetables},
 volume = {77},
 year = {2010}
}


                
Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli
Carsten Marr, Fabian J Theis, Larry S Liebovitch, Marc-Thorsten Hütt
PLoS computational biology, 2010.
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Cite

                    @article{marr2010patterns,
 author = {Marr, Carsten and Theis, Fabian J and Liebovitch, Larry S and Hütt, Marc-Thorsten},
 journal = {PLoS computational biology},
 number = {7},
 pages = {e1000836},
 publisher = {Public Library of Science San Francisco, USA},
 title = {Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli},
 volume = {6},
 year = {2010}
}


                
Network dynamics as an interface between modeling and experiment in systems biology
James Smith, Marc-Thorsten Hütt
Systems Biology in Psychiatric Research: From High-Throughput Data to Mathematical Modeling, 2010.
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Cite

                    @article{smith2010network,
 author = {Smith, James and Hütt, Marc-Thorsten},
 journal = {Systems Biology in Psychiatric Research: From High-Throughput Data to Mathematical Modeling},
 pages = {243--276},
 publisher = {Wiley-VCH Verlag GmbH & Co. KGaA Weinheim, Germany},
 title = {Network dynamics as an interface between modeling and experiment in systems biology},
 year = {2010}
}


                
Graph coloring dynamics: A simple model scenario for distributed decisions in production logistics
K Windt, M-T Hütt
CIRP annals, 2010.
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Cite

                    @article{windt2010graph,
 author = {Windt, K and Hütt, M-T},
 journal = {CIRP annals},
 number = {1},
 pages = {461--464},
 publisher = {Elsevier},
 title = {Graph coloring dynamics: A simple model scenario for distributed decisions in production logistics},
 volume = {59},
 year = {2010}
}


                
Determining the properties of gene regulatory networks from expression data
Larry S Liebovitch, Lina A Shehadeh, Viktor K Jirsa, Marc-Thorsten Hütt, Carsten Marr
Handbook of research on computational methodologies in gene regulatory networks, 2010.
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Cite

                    @incollection{liebovitch2010determining,
 author = {Liebovitch, Larry S and Shehadeh, Lina A and Jirsa, Viktor K and Hütt, Marc-Thorsten and Marr, Carsten},
 booktitle = {Handbook of research on computational methodologies in gene regulatory networks},
 pages = {405--428},
 publisher = {IGI Global},
 title = {Determining the properties of gene regulatory networks from expression data},
 year = {2010}
}


                
Combining spiral and target wave detection to analyze excitable media dynamics
Daniel Geberth, Marc-Thorsten Hütt
Physica A: Statistical Mechanics and its Applications, 2010.
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Cite

                    @article{geberth2010combining,
 author = {Geberth, Daniel and Hütt, Marc-Thorsten},
 journal = {Physica A: Statistical Mechanics and its Applications},
 number = {2},
 pages = {249--258},
 publisher = {Elsevier},
 title = {Combining spiral and target wave detection to analyze excitable media dynamics},
 volume = {389},
 year = {2010}
}


                

2009

The mechanism of action of tapasin in the peptide exchange on MHC class I molecules determined from kinetics simulation studies
Clemens Schneeweiss, Malgorzata Garstka, James Smith, Marc-Thorsten Hütt, Sebastian Springer
Molecular immunology, 2009.
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Cite

                    @article{schneeweiss2009mechanism,
 author = {Schneeweiss, Clemens and Garstka, Malgorzata and Smith, James and Hütt, Marc-Thorsten and Springer, Sebastian},
 journal = {Molecular immunology},
 number = {10},
 pages = {2054--2063},
 publisher = {Pergamon},
 title = {The mechanism of action of tapasin in the peptide exchange on MHC class I molecules determined from kinetics simulation studies},
 volume = {46},
 year = {2009}
}


                
Talking Patterns: Communication of organisms at different levels of organization---an alternative view of systems biology
U Lüttge, M-Th Hütt
Nova Acta Leopoldina NF, 2009.
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Cite

                    @article{luttge2009talking,
 author = {Lüttge, U and Hütt, M-Th},
 journal = {Nova Acta Leopoldina NF},
 number = {357},
 pages = {161--174},
 title = {Talking Patterns: Communication of organisms at different levels of organization---an alternative view of systems biology},
 volume = {96},
 year = {2009}
}


                
Systematics of short-range correlations in eukaryotic genomes
Jörn Hameister, Werner E Helm, Marc-Thorsten Hütt, Manuel Dehnert
Advances in Data Analysis, Data Handling and Business Intelligence, 2009.
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Cite

                    @incollection{hameister2009systematics,
 author = {Hameister, Jörn and Helm, Werner E and Hütt, Marc-Thorsten and Dehnert, Manuel},
 booktitle = {Advances in Data Analysis, Data Handling and Business Intelligence},
 pages = {627--637},
 publisher = {Springer, Berlin, Heidelberg},
 title = {Systematics of short-range correlations in eukaryotic genomes},
 year = {2009}
}


                
Ranges of control in the transcriptional regulation of Escherichia coli
Nikolaus Sonnenschein, Marc-Thorsten Hütt, Helga Stoyan, Dietrich Stoyan
BMC systems biology, 2009.
Cite Google Scholar

Cite

                    @article{sonnenschein2009ranges,
 author = {Sonnenschein, Nikolaus and Hütt, Marc-Thorsten and Stoyan, Helga and Stoyan, Dietrich},
 journal = {BMC systems biology},
 number = {1},
 pages = {1--11},
 publisher = {BioMed Central},
 title = {Ranges of control in the transcriptional regulation of Escherichia coli},
 volume = {3},
 year = {2009}
}


                
Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation
Daniel Geberth, Marc-Thorsten Hütt
PLoS computational biology, 2009.
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Cite

                    @article{geberth2009predicting,
 author = {Geberth, Daniel and Hütt, Marc-Thorsten},
 journal = {PLoS computational biology},
 number = {7},
 pages = {e1000422},
 publisher = {Public Library of Science San Francisco, USA},
 title = {Predicting the distribution of spiral waves from cell properties in a developmental-path model of Dictyostelium pattern formation},
 volume = {5},
 year = {2009}
}


                
Outer-totalistic cellular automata on graphs
Carsten Marr, Marc-Thorsten Hütt
Physics Letters A, 2009.
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Cite

                    @article{marr2009outer,
 author = {Marr, Carsten and Hütt, Marc-Thorsten},
 journal = {Physics Letters A},
 number = {5},
 pages = {546--549},
 publisher = {Elsevier},
 title = {Outer-totalistic cellular automata on graphs},
 volume = {373},
 year = {2009}
}


                
Interplay between topology and dynamics in excitation patterns on hierarchical graphs
Marc Hütt, Annick Lesne
Frontiers in neuroinformatics, 2009.
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Cite

                    @article{hutt2009interplay,
 author = {Hütt, Marc and Lesne, Annick},
 journal = {Frontiers in neuroinformatics},
 pages = {28},
 publisher = {Frontiers},
 title = {Interplay between topology and dynamics in excitation patterns on hierarchical graphs},
 volume = {3},
 year = {2009}
}


                
A model of graph coloring dynamics with attention waves and strategic waiting
Borislav Hadzhiev, Katja Windt, Werner Bergholz, Marc-Thorsten Hütt
Advances in Complex Systems, 2009.
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Cite

                    @article{hadzhiev2009model,
 author = {Hadzhiev, Borislav and Windt, Katja and Bergholz, Werner and Hütt, Marc-Thorsten},
 journal = {Advances in Complex Systems},
 number = {06},
 pages = {549--564},
 publisher = {World Scientific Publishing Company},
 title = {A model of graph coloring dynamics with attention waves and strategic waiting},
 volume = {12},
 year = {2009}
}


                

2008

Reply to ``Comment on `Regularizing capacity of metabolic networks'''
Carsten Marr, Marc-Thorsten Hütt, Mark Müller-Linow
Physical Review E, 2008.
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Cite

                    @article{marr2008reply,
 author = {Marr, Carsten and Hütt, Marc-Thorsten and Müller-Linow, Mark},
 journal = {Physical Review E},
 number = {2},
 pages = {023902},
 publisher = {APS},
 title = {Reply to ``Comment on `Regularizing capacity of metabolic networks'''},
 volume = {77},
 year = {2008}
}


                
Predicting spiral wave patterns from cell properties in a model of biological self-organization
Daniel Geberth, Marc-Thorsten Hütt
Physical Review E, 2008.
Cite Google Scholar

Cite

                    @article{geberth2008predicting,
 author = {Geberth, Daniel and Hütt, Marc-Thorsten},
 journal = {Physical Review E},
 number = {3},
 pages = {031917},
 publisher = {APS},
 title = {Predicting spiral wave patterns from cell properties in a model of biological self-organization},
 volume = {78},
 year = {2008}
}


                
Pattern formation and efficiency of reaction-diffusion processes on complex networks
Sebastian Weber, M-T Hütt, MARKUS Porto
EPL (Europhysics Letters), 2008.
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Cite

                    @article{weber2008pattern,
 author = {Weber, Sebastian and Hütt, M-T and Porto, MARKUS},
 journal = {EPL (Europhysics Letters)},
 number = {2},
 pages = {28003},
 publisher = {IOP Publishing},
 title = {Pattern formation and efficiency of reaction-diffusion processes on complex networks},
 volume = {82},
 year = {2008}
}


                
Organization of excitable dynamics in hierarchical biological networks
Mark Müller-Linow, Claus C Hilgetag, Marc-Thorsten Hütt
PLoS computational biology, 2008.
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Cite

                    @article{muller2008organization,
 author = {Müller-Linow, Mark and Hilgetag, Claus C and Hütt, Marc-Thorsten},
 journal = {PLoS computational biology},
 number = {9},
 pages = {e1000190},
 publisher = {Public Library of Science San Francisco, USA},
 title = {Organization of excitable dynamics in hierarchical biological networks},
 volume = {4},
 year = {2008}
}


                
Dissecting the logical types of network control in gene expression profiles
Carsten Marr, Marcel Geertz, Marc-Thorsten Hütt, Georgi Muskhelishvili
BMC systems biology, 2008.
Cite Google Scholar

Cite

                    @article{marr2008dissecting,
 author = {Marr, Carsten and Geertz, Marcel and Hütt, Marc-Thorsten and Muskhelishvili, Georgi},
 journal = {BMC systems biology},
 number = {1},
 pages = {1--9},
 publisher = {BioMed Central},
 title = {Dissecting the logical types of network control in gene expression profiles},
 volume = {2},
 year = {2008}
}


                

2007

Regularizing capacity of metabolic networks
Carsten Marr, Mark Müller-Linow, Marc-Thorsten Huett
Physical Review E, 2007.
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Cite

                    @article{marr2007regularizing,
 author = {Marr, Carsten and Müller-Linow, Mark and Huett, Marc-Thorsten},
 journal = {Physical Review E},
 number = {4},
 pages = {041917},
 publisher = {American Physical Society},
 title = {Regularizing capacity of metabolic networks},
 volume = {75},
 year = {2007}
}


                
Reconstruction of cellular variability from spatiotemporal patterns of Dictyostelium discoideum
Christiane Hilgardt, Stefan C Müller, Marc-Thorsten Hütt
Nonlinear Biomedical Physics, 2007.
Cite Google Scholar

Cite

                    @article{hilgardt2007reconstruction,
 author = {Hilgardt, Christiane and Müller, Stefan C and Hütt, Marc-Thorsten},
 journal = {Nonlinear Biomedical Physics},
 number = {1},
 pages = {1--13},
 publisher = {BioMed Central},
 title = {Reconstruction of cellular variability from spatiotemporal patterns of Dictyostelium discoideum},
 volume = {1},
 year = {2007}
}


                
Noise-induced phenomena and complex rhythms: Theoretical considerations, modelling and experimental
Marc-Thorsten Hütt, Ulrich Lüttge
Rhythms in plants, 2007.
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Cite

                    @incollection{hutt2007noise,
 author = {Hütt, Marc-Thorsten and Lüttge, Ulrich},
 booktitle = {Rhythms in plants},
 pages = {313--339},
 publisher = {Springer, Berlin, Heidelberg},
 title = {Noise-induced phenomena and complex rhythms: Theoretical considerations, modelling and experimental},
 year = {2007}
}


                
Distinct fluorescent pattern of KAT1:: GFP in the plasma membrane of Vicia faba guard cells
Ulrike Homann, Tobias Meckel, Jennifer Hewing, Marc-Thorsten Hütt, Annette C Hurst
European journal of cell biology, 2007.
Cite Google Scholar

Cite

                    @article{homann2007distinct,
 author = {Homann, Ulrike and Meckel, Tobias and Hewing, Jennifer and Hütt, Marc-Thorsten and Hurst, Annette C},
 journal = {European journal of cell biology},
 number = {8},
 pages = {489--500},
 publisher = {Urban & Fischer},
 title = {Distinct fluorescent pattern of KAT1:: GFP in the plasma membrane of Vicia faba guard cells},
 volume = {86},
 year = {2007}
}


                
Consistency analysis of metabolic correlation networks
Mark Müller-Linow, Wolfram Weckwerth, Marc-Thorsten Hütt
BMC Systems Biology, 2007.
Cite Google Scholar

Cite

                    @article{muller2007consistency,
 author = {Müller-Linow, Mark and Weckwerth, Wolfram and Hütt, Marc-Thorsten},
 journal = {BMC Systems Biology},
 number = {1},
 pages = {1--12},
 publisher = {BioMed Central},
 title = {Consistency analysis of metabolic correlation networks},
 volume = {1},
 year = {2007}
}


                

2006

Topology regulates the distribution pattern of excitations in excitable dynamics on graphs
Mark Müller-Linow, Carsten Marr, Marc-Thorsten Hütt
Physical Review E, 2006.
Cite Google Scholar

Cite

                    @article{muller2006topology,
 author = {Müller-Linow, Mark and Marr, Carsten and Hütt, Marc-Thorsten},
 journal = {Physical Review E},
 number = {1},
 pages = {016112},
 publisher = {APS},
 title = {Topology regulates the distribution pattern of excitations in excitable dynamics on graphs},
 volume = {74},
 year = {2006}
}


                
Similar impact of topological and dynamic noise on complex patterns
Carsten Marr, Marc-Thorsten Hütt
Physics Letters A, 2006.
Cite Google Scholar

Cite

                    @article{marr2006similar,
 author = {Marr, Carsten and Hütt, Marc-Thorsten},
 journal = {Physics Letters A},
 number = {5},
 pages = {302--305},
 publisher = {Elsevier},
 title = {Similar impact of topological and dynamic noise on complex patterns},
 volume = {349},
 year = {2006}
}


                
Selbstorganisation: ein Denksystem für Natur und Gesellschaft
Miloš Vec, Marc-Thorsten Hütt, Alexandra M Freund
Böhlau Verlag Köln Weimar, 2006.
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Cite

                    @misc{vec2006selbstorganisation,
 author = {Vec, Miloš and Hütt, Marc-Thorsten and Freund, Alexandra M},
 publisher = {Böhlau Verlag Köln Weimar},
 title = {Selbstorganisation: ein Denksystem für Natur und Gesellschaft},
 year = {2006}
}


                
Methoden der Bioinformatik: Eine Einführung
Marc-Thorsten Hütt, Manuel Dehnert
Springer Berlin, 2006.
Cite Google Scholar

Cite

                    @misc{hutt2006methoden,
 author = {Hütt, Marc-Thorsten and Dehnert, Manuel},
 publisher = {Springer Berlin},
 title = {Methoden der Bioinformatik: Eine Einführung},
 year = {2006}
}


                
Informational structure of two closely related eukaryotic genomes
Manuel Dehnert, Werner E Helm, Marc-Thorsten Hütt
Physical Review E, 2006.
Cite Google Scholar

Cite

                    @article{dehnert2006informational,
 author = {Dehnert, Manuel and Helm, Werner E and Hütt, Marc-Thorsten},
 journal = {Physical Review E},
 number = {2},
 pages = {021913},
 publisher = {APS},
 title = {Informational structure of two closely related eukaryotic genomes},
 volume = {74},
 year = {2006}
}


                

2005

Topology regulates pattern formation capacity of binary cellular automata on graphs
Carsten Marr, Marc-Thorsten Hütt
Physica A: Statistical Mechanics and its Applications, 2005.
Cite Google Scholar

Cite

                    @article{marr2005topology,
 author = {Marr, Carsten and Hütt, Marc-Thorsten},
 journal = {Physica A: Statistical Mechanics and its Applications},
 pages = {641--662},
 publisher = {Elsevier},
 title = {Topology regulates pattern formation capacity of binary cellular automata on graphs},
 volume = {354},
 year = {2005}
}


                
The interplay of synchronization and fluctuations reveals connectivity levels in networks of nonlinear oscillators
M-Th Hütt, U Lüttge
Physica A: Statistical Mechanics and its Applications, 2005.
Cite Google Scholar

Cite

                    @article{hutt2005interplay,
 author = {Hütt, M-Th and Lüttge, U},
 journal = {Physica A: Statistical Mechanics and its Applications},
 number = {2-4},
 pages = {207--226},
 publisher = {North-Holland},
 title = {The interplay of synchronization and fluctuations reveals connectivity levels in networks of nonlinear oscillators},
 volume = {350},
 year = {2005}
}


                
Network dynamics in plant biology: current progress in historical perspective
Marc-Thorsten Hütt, Ulrich Lüttge
Progress in Botany, 2005.
Cite Google Scholar

Cite

                    @article{hutt2005network,
 author = {Hütt, Marc-Thorsten and Lüttge, Ulrich},
 journal = {Progress in Botany},
 pages = {277--310},
 publisher = {Springer, Berlin, Heidelberg},
 title = {Network dynamics in plant biology: current progress in historical perspective},
 year = {2005}
}


                
Information theory reveals large-scale synchronisation of statistical correlations in eukaryote genomes
Manuel Dehnert, Werner E Helm, Marc-Thorsten Hütt
Gene, 2005.
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Cite

                    @article{dehnert2005information,
 author = {Dehnert, Manuel and Helm, Werner E and Hütt, Marc-Thorsten},
 journal = {Gene},
 number = {1},
 pages = {81--90},
 publisher = {Elsevier},
 title = {Information theory reveals large-scale synchronisation of statistical correlations in eukaryote genomes},
 volume = {345},
 year = {2005}
}


                
Genome phylogeny based on short-range correlations in DNA sequences
Manuel Dehnert, Rainer Plaumann, Werner E Helm, Marc-Th Hütt
Journal of computational Biology, 2005.
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                    @article{dehnert2005genome,
 author = {Dehnert, Manuel and Plaumann, Rainer and Helm, Werner E and Hütt, Marc-Th},
 journal = {Journal of computational Biology},
 number = {5},
 pages = {545--553},
 publisher = {Mary Ann Liebert, Inc. 2 Madison Avenue Larchmont, NY 10538 USA},
 title = {Genome phylogeny based on short-range correlations in DNA sequences},
 volume = {12},
 year = {2005}
}


                

2004

Selbstorganisation: Aspekte eines Begriffs-und Methodentransfers
Alexandra M Freund, Marc-Thorsten Hütt, Miloš Vec
Österreichische Arbeitsgemeinschaft für Systemische Therapie und Systemische~łdots, 2004.
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                    @misc{freund2004selbstorganisation,
 author = {Freund, Alexandra M and Hütt, Marc-Thorsten and Vec, Miloš},
 publisher = {Österreichische Arbeitsgemeinschaft für Systemische Therapie und Systemische~łdots},
 title = {Selbstorganisation: Aspekte eines Begriffs-und Methodentransfers},
 year = {2004}
}


                
Scale-dependence of spatiotemporal filters inspired by cellular automata
Hauke Busch, Marc-Thorsten Hütt
International Journal of Bifurcation and Chaos, 2004.
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                    @article{busch2004scale,
 author = {Busch, Hauke and Hütt, Marc-Thorsten},
 journal = {International Journal of Bifurcation and Chaos},
 number = {06},
 pages = {1957--1973},
 publisher = {World Scientific Publishing Company},
 title = {Scale-dependence of spatiotemporal filters inspired by cellular automata},
 volume = {14},
 year = {2004}
}


                
High frequency or ultradian rhythms in plants
Ulrich Lüttge, M-Th Hütt
Progress in Botany, 2004.
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                    @incollection{luttge2004high,
 author = {Lüttge, Ulrich and Hütt, M-Th},
 booktitle = {Progress in Botany},
 pages = {235--263},
 publisher = {Springer, Berlin, Heidelberg},
 title = {High frequency or ultradian rhythms in plants},
 year = {2004}
}


                

2003

The effect of biological variability on spatiotemporal patterns: model simulations for a network of biochemical oscillators
Marc-Thorsten Hütt, Hauke Busch, Friedemann Kaiser
Nova Acta Leopold, 2003.
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                    @article{hutt2003effect,
 author = {Hütt, Marc-Thorsten and Busch, Hauke and Kaiser, Friedemann},
 journal = {Nova Acta Leopold},
 pages = {381--404},
 title = {The effect of biological variability on spatiotemporal patterns: model simulations for a network of biochemical oscillators},
 volume = {332},
 year = {2003}
}


                
Nonlinear dynamics and the spatiotemporal principles of biology
F Beck, M-Th Hütt, U Lüttge
Nova Acta Leopold Volume, 2003.
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                    @article{beck2003nonlinear,
 author = {Beck, F and Hütt, M-Th and Lüttge, U},
 journal = {Nova Acta Leopold Volume},
 title = {Nonlinear dynamics and the spatiotemporal principles of biology},
 volume = {332},
 year = {2003}
}


                
Method for detecting the signature of noise-induced structures in spatiotemporal data sets: an application to excitable media
Marc-Thorsten Huett
Noise in Complex Systems and Stochastic Dynamics, 2003.
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                    @inproceedings{huett2003method,
 author = {Huett, Marc-Thorsten},
 booktitle = {Noise in Complex Systems and Stochastic Dynamics},
 organization = {SPIE},
 pages = {383--395},
 title = {Method for detecting the signature of noise-induced structures in spatiotemporal data sets: an application to excitable media},
 volume = {5114},
 year = {2003}
}


                
Method for detecting the signature of noise-induced
Marc-Thorsten Hütt
Noise in Complex Systems and Stochastic Dynamics, 2003.
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                    @article{hutt2003method,
 author = {Hütt, Marc-Thorsten},
 journal = {Noise in Complex Systems and Stochastic Dynamics},
 pages = {383},
 publisher = {SPIE},
 title = {Method for detecting the signature of noise-induced},
 year = {2003}
}


                
Identification of rhythmic subsystems in the circadian cycle of crassulacean acid metabolism under thermoperiodic perturbations
Andreas Bohn, Sven Hinderlich, M-T Hütt, Friedemann Kaiser, Ulrich Lüttge
Walter de Gruyter, 2003.
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                    @article{bohn2003identification,
 author = {Bohn, Andreas and Hinderlich, Sven and Hütt, M-T and Kaiser, Friedemann and Lüttge, Ulrich},
 publisher = {Walter de Gruyter},
 title = {Identification of rhythmic subsystems in the circadian cycle of crassulacean acid metabolism under thermoperiodic perturbations},
 year = {2003}
}


                
Ca2+ dynamics during membrane excitation of green alga Chara: model simulations and experimental data
M Wacke, G Thiel, M-T Hütt
The Journal of membrane biology, 2003.
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                    @article{wacke2003ca2+,
 author = {Wacke, M and Thiel, G and Hütt, M-T},
 journal = {The Journal of membrane biology},
 number = {3},
 pages = {179--192},
 publisher = {Springer-Verlag},
 title = {Ca2+ dynamics during membrane excitation of green alga Chara: model simulations and experimental data},
 volume = {191},
 year = {2003}
}


                
A discrete autoregressive process as a model for short-range correlations in DNA sequences
Manuel Dehnert, WE Helm, M-Th Hütt
Physica A: Statistical Mechanics and its Applications, 2003.
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                    @article{dehnert2003discrete,
 author = {Dehnert, Manuel and Helm, WE and Hütt, M-Th},
 journal = {Physica A: Statistical Mechanics and its Applications},
 number = {3-4},
 pages = {535--553},
 publisher = {North-Holland},
 title = {A discrete autoregressive process as a model for short-range correlations in DNA sequences},
 volume = {327},
 year = {2003}
}


                

2002

Responses of a plant circadian rhythm to thermoperiodic perturbations with asymmetric temporal patterns and the rate of temperature change
Andreas Bohn, Uwe Rascher, Marc-Thorsten Hütt, Friedemann Kaiser, Ulrich Lüttge
Biological rhythm research, 2002.
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                    @article{bohn2002responses,
 author = {Bohn, Andreas and Rascher, Uwe and Hütt, Marc-Thorsten and Kaiser, Friedemann and Lüttge, Ulrich},
 journal = {Biological rhythm research},
 number = {2},
 pages = {151--170},
 publisher = {Taylor & Francis},
 title = {Responses of a plant circadian rhythm to thermoperiodic perturbations with asymmetric temporal patterns and the rate of temperature change},
 volume = {33},
 year = {2002}
}


                
Period-2 cycles and 2: 1 phase locking in a biological clock driven by temperature pulses
M-TH HüTT, U Rascher, F Beck, U Lüttge
Journal of theoretical biology, 2002.
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                    @article{hutt2002period,
 author = {HüTT, M-TH and Rascher, U and Beck, F and Lüttge, U},
 journal = {Journal of theoretical biology},
 number = {3},
 pages = {383--390},
 publisher = {Elsevier},
 title = {Period-2 cycles and 2: 1 phase locking in a biological clock driven by temperature pulses},
 volume = {217},
 year = {2002}
}


                
Nonlinear dynamics as a tool for modelling in plant physiology
M-Th Hütt, U Lüttge
Plant Biology, 2002.
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                    @article{hutt2002nonlinear,
 author = {Hütt, M-Th and Lüttge, U},
 journal = {Plant Biology},
 number = {03},
 pages = {281--297},
 publisher = {o̧pyright Georg Thieme Verlag Stuttgart˙ New York},
 title = {Nonlinear dynamics as a tool for modelling in plant physiology},
 volume = {4},
 year = {2002}
}


                
Method for detecting the signature of noise-induced structures in spatiotemporal data sets
M-Th Hütt, R Neff, H Busch, F Kaiser
Physical Review E, 2002.
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                    @article{hutt2002method,
 author = {Hütt, M-Th and Neff, R and Busch, H and Kaiser, F},
 journal = {Physical Review E},
 number = {2},
 pages = {026117},
 publisher = {APS},
 title = {Method for detecting the signature of noise-induced structures in spatiotemporal data sets},
 volume = {66},
 year = {2002}
}


                

2001

Spatiotemporal variation of metabolism in a plant circadian rhythm: the biological clock as an assembly of coupled individual oscillators
Uwe Rascher, Marc-Thorsten Hütt, Katharina Siebke, Barry Osmond, Friedrich Beck, Ulrich Lüttge
Proceedings of the National Academy of Sciences, 2001.
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                    @article{rascher2001spatiotemporal,
 author = {Rascher, Uwe and Hütt, Marc-Thorsten and Siebke, Katharina and Osmond, Barry and Beck, Friedrich and Lüttge, Ulrich},
 journal = {Proceedings of the National Academy of Sciences},
 number = {20},
 pages = {11801--11805},
 publisher = {National Academy of Sciences},
 title = {Spatiotemporal variation of metabolism in a plant circadian rhythm: the biological clock as an assembly of coupled individual oscillators},
 volume = {98},
 year = {2001}
}


                
Spatio-temporal variation of photosynthetic activity during the endogenous circadian CAM rhythm of Kalanchoë daigremontiana: the biological clock as an assembly of coupled nonlinear oscillators
U Rascher, M-Th Hütt, CB Osmond, K Siebke, U Lüttge
Science Access, 2001.
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                    @article{rascher2001spatio,
 author = {Rascher, U and Hütt, M-Th and Osmond, CB and Siebke, K and Lüttge, U},
 journal = {Science Access},
 number = {1},
 publisher = {CSIRO PUBLISHING},
 title = {Spatio-temporal variation of photosynthetic activity during the endogenous circadian CAM rhythm of Kalanchoë daigremontiana: the biological clock as an assembly of coupled nonlinear oscillators},
 volume = {3},
 year = {2001}
}


                
Quantification of spatiotemporal phenomena by means of cellular automata techniques
M-Th Hütt, R Neff
Physica A: Statistical Mechanics and its Applications, 2001.
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                    @article{hutt2001quantification,
 author = {Hütt, M-Th and Neff, R},
 journal = {Physica A: Statistical Mechanics and its Applications},
 number = {3-4},
 pages = {498--516},
 publisher = {North-Holland},
 title = {Quantification of spatiotemporal phenomena by means of cellular automata techniques},
 volume = {289},
 year = {2001}
}


                
Effect of colored noise on networks of nonlinear oscillators
H Busch, M-Th Hütt, F Kaiser
Physical Review E, 2001.
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                    @article{busch2001effect,
 author = {Busch, H and Hütt, M-Th and Kaiser, F},
 journal = {Physical Review E},
 number = {2},
 pages = {021105},
 publisher = {APS},
 title = {Effect of colored noise on networks of nonlinear oscillators},
 volume = {64},
 year = {2001}
}


                
Dynamical Regimes in the Metabolic Cycle of a Higher Plant are Characterized by Different Fractal Dimensions
M-Th Hütt, U Rascher, U Lüttge
Emergent Nature: Patterns, Growth and Scaling in the Sciences, 2001.
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                    @incollection{hutt2001dynamical,
 author = {Hütt, M-Th and Rascher, U and Lüttge, U},
 booktitle = {Emergent Nature: Patterns, Growth and Scaling in the Sciences},
 pages = {123--133},
 title = {Dynamical Regimes in the Metabolic Cycle of a Higher Plant are Characterized by Different Fractal Dimensions},
 year = {2001}
}


                
Datenanalyse in der Biologie
Marc-Thorsten Hütt
Emergent Nature: Patterns, Growth and Scaling in the Sciences, 2001.
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Cite

                    @incollection{hutt2001dynamical,
 author = {Hütt, M-Th and Rascher, U and Lüttge, U},
 booktitle = {Emergent Nature: Patterns, Growth and Scaling in the Sciences},
 pages = {123--133},
 title = {Dynamical Regimes in the Metabolic Cycle of a Higher Plant are Characterized by Different Fractal Dimensions},
 year = {2001}
}